PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG013800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 225aa    MW: 24960.5 Da    PI: 9.1591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG013800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.8e-2243104259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                          dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Pavir.7NG013800.1.p  43 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 104
                          8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-2332104IPR003657WRKY domain
SuperFamilySSF1182901.57E-2235105IPR003657WRKY domain
PROSITE profilePS5081116.06537106IPR003657WRKY domain
SMARTSM007741.6E-3342105IPR003657WRKY domain
PfamPF031064.4E-2543103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALDSVPTYL SDLGSSHRAA RTQQQRIRKD ERTWTSDTYA PYDDGHQWRK YGEKKLSNSN  60
FPRFYYRCTY KNDMKCPATK QVQQKDTSDP PLFSVTYFNH HTCSTSSNPM GSTRDIAAQS  120
SSRKAVSICF SPHTASEQPA FLTSSATPQS PNIHSFRANQ QPERSPHASQ FQWTTASSPT  180
SNGPLTMEVD SVSGASISSS SGGALPRTLL PIGQSRCIEY FHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-1643103968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93260.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG013800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586290.0KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.11e-144probable WRKY transcription factor 46 isoform X1
TrEMBLA0A2T7E4I61e-145A0A2T7E4I6_9POAL; Uncharacterized protein
STRINGPavir.J31578.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-21WRKY DNA-binding protein 55