PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG281600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 301aa MW: 31222.8 Da PI: 7.7179

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG281600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r H Pavir.7KG281600.1.p 5 TCKLCSRRFASPRALAGHMRAH 26 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	4	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.14E-7	5	26	No hit	No description
Pfam	PF13894	1.6E-4	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.14E-7	170	194	No hit	No description
Pfam	PF13912	1.2E-10	174	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	41	175	195	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.7E-6	240	254	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSIAA AKSQISSASS ASTSLAAAAA GGGLDDDTDA 60 KKPGPIQGQV LREKPKRRAR LAVSDFSDRE SETTDYYSPD AKRSPGGSGD AEPVSSVSDG 120 DTPVEDVALS LMMLSRDSWP APPPPAYYSA YRADSDDARP GPAVAATAAQ KRTRYECPAC 180 KKVFRSYQAL GGHRASNVRG GRGGCCAPPL STPPPPAPLQ PLPECDDGGE EEDPSKATSV 240 FPSGQALGGH KRSHLCPAAA DPSIAMKSLG FIDLNLPAPF DDVENSAVSD PFLSSKPARS 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG281600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825815.1	1e-141	zinc finger protein ZAT1-like
TrEMBL	A0A3L6Q711	1e-168	A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRING	Pavir.J38417.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	5e-24	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG281600.1.p