PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG232700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 331aa    MW: 34965.1 Da    PI: 6.7764
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG232700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.8e-28130190259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDg++WrKYGqK++ g+++pr+YYrCt++   +Cp++k+v+r+++dp++++++Y+g+H+++
  Pavir.6KG232700.1.p 130 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRTDDDPSLFDVVYHGDHTCR 190
                          8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29118190IPR003657WRKY domain
PROSITE profilePS5081121.551124187IPR003657WRKY domain
SuperFamilySSF1182907.06E-26127190IPR003657WRKY domain
SMARTSM007742.6E-40129191IPR003657WRKY domain
PfamPF031062.4E-27130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAEAGESGGR ARLVSELVRV QDLVHRLELQ LRAPADAASV DLCRQLIHQI VALTDRSIGM  60
ARCSPDLAAA AAQQQQQPLS GAPSPLSDAG SDHHQPFLRA SPKKRKATAR WTNQQVRVSA  120
AGAGAEGPAD DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QNCPATKQVQ RTDDDPSLFD  180
VVYHGDHTCR PSAAPTRRTP HNPHAQAALQ GLAARLTVTT DDAIAAAAAL PPMTPEPDSC  240
PPRGASSPWS LASPVGSDSN GCAQAVSPCP VPGYAAWGSH GDLQEVVSAC AAVSDLQGLP  300
ALDSEFMPLE CFAFDQSFDM GGVMPSLFYP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-23130190969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105LRASPKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.21591e-137root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG232700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586270.0KU058627.1 UNVERIFIED: Panicum miliaceum WRKY14-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.10.0probable WRKY transcription factor 41
TrEMBLA0A2S3I2580.0A0A2S3I258_9POAL; Uncharacterized protein
STRINGPavir.Fa01520.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-30WRKY DNA-binding protein 46