PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG619400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 160aa    MW: 17933.9 Da    PI: 6.9355
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG619400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB142.11.4e-4439128695
                NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                          ++lPianv+rimk+vlP +akisk aket+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e+
  Pavir.5NG619400.1.p  39 NLLPIANVGRIMKEVLPPQAKISKRAKETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESEE 128
                          68*************************************************************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.8E-4138129IPR009072Histone-fold
SuperFamilySSF471133.57E-3339131IPR009072Histone-fold
PfamPF008086.9E-2441104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-146886No hitNo description
PRINTSPR006152.0E-1487105No hitNo description
PRINTSPR006152.0E-14106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSENFNFTHF AQQRQPQNLS SASGSTTSKD DNSEAGHGNL LPIANVGRIM KEVLPPQAKI  60
SKRAKETIQE CATEFVGFVT GEASERCRRE RRKTINGDDI CHAMRSLGLD HYADAMRRYL  120
QRYRESEELT AALNSGGIQI DVRAELSIFR GDDEQRDRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-3640125792Transcription factor HapC (Eurofung)
4g92_B5e-3640125792Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG619400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9742441e-93JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814482.11e-91transcriptional activator hap3-like
SwissprotO040274e-42NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7DBX64e-93A0A2T7DBX6_9POAL; Uncharacterized protein
STRINGPavir.Eb03825.1.p7e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-44nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]