PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG539500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 24873.2 Da PI: 9.8299 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8e-21 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ Pavir.5NG539500.1.p 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.13E-18 | 32 | 90 | No hit | No description |
Pfam | PF00847 | 1.7E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 33 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAPRAADKSP VPPATGLGLG VGGAVGGLGM GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQCPVGAG AGSPSSNSTV YSRGGGSGCG 120 VEAPMQAMPL PPALDLDLFH RAAAVTAVSP GGMRFPFKGY PVARPTPNPY FFYEQAAAAA 180 AAAAGYRMLK VAPPPVTVAA VAQSDSDSSS VVDRTPSPPA VAAKKEVSFD LDLNWPPPAE 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 31 | 91 | 3 | 64 | ATERF1 |
3gcc_A | 6e-22 | 31 | 91 | 3 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.210 | 1e-138 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG539500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970251.1 | 1e-124 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | K3XLF6 | 1e-122 | K3XLF6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03458.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-20 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG539500.1.p |