PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG518000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 333aa    MW: 35235.2 Da    PI: 4.8196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG518000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.34.9e-2671411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                          lppGfrF Ptd+e++v+yL ++++g++l++   i e d +++ P+ L +  ++++++ +fF+  +  + +g+r++r  +  g+W+ +g+ 
  Pavir.5NG518000.1.p   7 LPPGFRFVPTDQEVIVYYLLRRIRGQPLPV-GDIVEDDPLSAPPRFLLE-KHGRKRDAFFFAAGQAMNGRGSRQKRsCAGGGTWQGQGRR 94 
                          79****************************.669999**********74.45677899******************87889*******98 PP

                  NAM  90 kevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k  +            ++e  + k  L f++ ++ kg +t Wvmhey++
  Pavir.5NG518000.1.p  95 KGAKGGdgerqrvrvgGEEIEWRKYALNFHE-DDVKG-STGWVMHEYSI 141
                          88887655544444434444888999****5.55554.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-314159IPR003441NAC domain
PROSITE profilePS5100529.1757160IPR003441NAC domain
PfamPF023655.0E-198141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASKPALPPG FRFVPTDQEV IVYYLLRRIR GQPLPVGDIV EDDPLSAPPR FLLEKHGRKR  60
DAFFFAAGQA MNGRGSRQKR SCAGGGTWQG QGRRKGAKGG DGERQRVRVG GEEIEWRKYA  120
LNFHEDDVKG STGWVMHEYS ITAPPSLAAS PQRVYRIRLS GHGRNAQKRK RSELDWGSDD  180
EEAGEEYHAA ARAATLPAAA EAGAPFAGEY PPAQLQPEPI GTLPVAAAAE AGAPFAGEYP  240
PALPQPEPVG TLPVAAVVDA GNGDPSGWTE DGSSGALSAA VSSADQDLPA LVDGGDEWNF  300
MFSLSDLLPD FDFFSGAADA GEKTPSPMVP AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG518000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815333.11e-168NAC domain-containing protein 41-like
TrEMBLA0A2T7DG911e-167A0A2T7DG91_9POAL; Uncharacterized protein
STRINGPavir.Ea02839.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-13NAC domain containing protein 83