PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG497800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 295aa    MW: 32186.5 Da    PI: 4.8187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG497800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-3089147259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  Pavir.5NG497800.1.p  89 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHP 147
                          69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-3185149IPR003657WRKY domain
SuperFamilySSF1182903.14E-2687149IPR003657WRKY domain
SMARTSM007743.9E-3788148IPR003657WRKY domain
PROSITE profilePS5081132.05389149IPR003657WRKY domain
PfamPF031062.7E-2690147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPE ESQAAADAES PRTGAKRERD LCDIPASPSS PLPAAKRSRR  60
SVEKRVVSVP LAECGDRPRG ASGEGPPPSD SWTWRKYGQK PIKGSPYPRG YYRCSSSKGC  120
PARKQVERSR ADPTVLLVTY TFEHNHPSPQ PKSHSCHQQG KASPRPAPKP EPAVEQAELG  180
PEHELKTEPE APEQELEPEQ EQKALASLVE PETATTATVA PVAEEDESFD FGWFDQYPTW  240
HRSALYAPLL PPEEWERELQ GEDALFAGLG ELPECAVVFG RRRELSLAAT APCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2164149679Disease resistance protein RRS1
5w3x_D4e-2164149679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.5990.0callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG497800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586170.0KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.10.0probable WRKY transcription factor 65
TrEMBLA0A3L6SS550.0A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-37WRKY DNA-binding protein 65