PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG466600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 373aa    MW: 40059.5 Da    PI: 9.4237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG466600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.2e-56241541128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Pavir.5NG466600.1.p  24 LPPGFRFHPTDEELITYYLRQKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDK 112
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++     + elvg+kktLvfykgrap+gekt+Wvmheyrl
  Pavir.5NG466600.1.p 113 EIYTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 154
                          ***9766666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6421175IPR003441NAC domain
PROSITE profilePS5100560.98924175IPR003441NAC domain
PfamPF023652.2E-2925154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSMEGSAAAG GGAAGGGSKK EESLPPGFRF HPTDEELITY YLRQKIADGS FTARAIAEVD  60
LNKCEPWDLP EKAKLGEKEW YFFSLRDRKY PTGVRTNRAT NAGYWKTTGK DKEIYTGQLP  120
ATPELVGMKK TLVFYKGRAP RGEKTNWVMH EYRLHSKSVP KSNKDEWVVC RVFAKSAGAK  180
KYPSNNAHSR SHHHPYALDM VPPLLPTLLQ HDPFARGPHH PYMTPADLAE LARFARGTPG  240
LHPPIQPHPG AAAAYINPAA VAPPFTLSGG LSLNLGASPA MPSPPPPQAL HGMSMAMSHQ  300
IIAPTGAGAT GNHHHQVMAG DHQQQMAPAG LGGCVIGPGA DAGFGAAAAG ARYHSLDVEQ  360
LVERYWPAGY QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-562318116171NO APICAL MERISTEM PROTEIN
1ut4_B2e-562318116171NO APICAL MERISTEM PROTEIN
1ut7_A2e-562318116171NO APICAL MERISTEM PROTEIN
1ut7_B2e-562318116171NO APICAL MERISTEM PROTEIN
4dul_A2e-562318116171NAC domain-containing protein 19
4dul_B2e-562318116171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.110730.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG466600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803276.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ26e-85NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3L6QN810.0A0A3L6QN81_PANMI; Uncharacterized protein
STRINGPavir.J02772.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-91NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]