PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG436600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 188aa    MW: 19085.6 Da    PI: 10.254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG436600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-0791131555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+ RR++iN+++  L++l+P++        +  ++L +A+eY+k+Lq
  Pavir.5NG436600.1.p  91 HNLSEK-RRSKINKKMKALQSLIPNS--------N-KTMLDEAIEYLKQLQ 131
                          777775.78****************8........2.378***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-1187143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.21E-1089135No hitNo description
Gene3DG3DSA:4.10.280.104.8E-1290143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-591131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-992136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGAAGADLGT GGDGALAASA LPAAAAAGGR GGGAAPDVHR GGGVPDGGAG AGPRPTGGLG  60
DSDAGLSEPE QVQAWQHGGS GSKRSCAAEV HNLSEKRRSK INKKMKALQS LIPNSNKTML  120
DEAIEYLKQL QLQVQASKME VAAACCRRRR TENGGATERN RGRIKLVCLD NGKFVRCRGL  180
SAVMLQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG436600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.12e-23bHLH family protein