PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG411900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 383aa    MW: 40133.4 Da    PI: 5.9205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG411900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.6e-25511805127
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 
                          f+ hPtd elv+ yL++ +e+ +  +  +i+  d+y ++P dL +      ++ +e+ wyfF++ ++k+ +gkrk r  at +g W++  
  Pavir.5NG411900.1.p  51 FQSHPTDLELVNSYLRPFLETGEAAA--FIHVGDVYAADPADLTRqfapaVAQDGERAWYFFTPLRHKSVRGKRKARtvATGEGCWHNEA 138
                          7779*****************99666..79999**********84467755566888********************76688******** PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+k+v+++  +++++g ++++ f +++  + ++t W+m e r
  Pavir.5NG411900.1.p 139 KSKPVYTAihGKRQIGYRQSFSFVNKEGGSRVRTGWLMMELR 180
                          ******99989999**********9999999********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.79447209IPR003441NAC domain
SuperFamilySSF1019414.32E-3149209IPR003441NAC domain
PfamPF023653.5E-1550180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMPDGLSTGS HSNSDSSPSL PPSPSPILPR PAATAMVRTP SAASKPPCAA FQSHPTDLEL  60
VNSYLRPFLE TGEAAAFIHV GDVYAADPAD LTRQFAPAVA QDGERAWYFF TPLRHKSVRG  120
KRKARTVATG EGCWHNEAKS KPVYTAIHGK RQIGYRQSFS FVNKEGGSRV RTGWLMMELR  180
ILKDDAGQGA RAEEENALGN IVLCKVYRSP RNPEPSGGVP APALKEEEAA DGDGESSAAT  240
ADDVDDDDSS DAPGPTKKSD EPESSEATVA APPGREEKAA GDEYSAEASA ASPARKRKAP  300
DDEGSGAAAA PRRASPGARA PPAAEIQCPH CGTHLAVTLK VSESKSETEI AKGEPGPGAS  360
DAAPRGEARG AAEKKVRFIQ FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-135120719166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG411900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.10.0protein ATAF2-like
TrEMBLA0A3L6SNQ30.0A0A3L6SNQ3_PANMI; Protein ATAF2-like
STRINGPavir.J36802.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.29e-19NAC domain containing protein 50