PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG411800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 278aa    MW: 29479.9 Da    PI: 5.8364
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG411800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.22.1e-12101435127
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknra......tksgyWk 84 
                          +rF P  +el++ +L+++v + ++   e+i+e+++y + P +L  +    ++++e+ wyfF++ + k  +++ ++ a       +   W 
  Pavir.5NG411800.1.p  10 LRFAPLYSELIDSFLRPRVVSGENVG-EFIHEAGVYAAGPDQLTgQflpGTAGDEEAWYFFTTLKLKGDQKSTASIApwtpgrEDGTSWG 98 
                          79****************99999666.89**************84467655567889******999876655544444544422334477 PP

                  NAM  85 atgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                                +  + + +  g ++ ++f    + +  ++++t+W m e r
  Pavir.5NG411800.1.p  99 DRIPCAPTSA-NARSRGQRQNFAFVwkeDDKLVRSVRTRWSMVELR 143
                          6666666665.8889*********965445667889******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.56158IPR003441NAC domain
SuperFamilySSF1019411.29E-166157IPR003441NAC domain
PfamPF023655.6E-710143IPR003441NAC domain
PROSITE profilePS510057.227251277IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
LPAQGAACAL RFAPLYSELI DSFLRPRVVS GENVGEFIHE AGVYAAGPDQ LTGQFLPGTA  60
GDEEAWYFFT TLKLKGDQKS TASIAPWTPG REDGTSWGDR IPCAPTSANA RSRGQRQNFA  120
FVWKEDDKLV RSVRTRWSMV ELRRDSSDLL ALCKVYRGVS DPKAKADDGS QVAAMAGAPG  180
RKEAEDEASA AAGVAAPGRE EDDEIDADTA AGSTGRQKKA VGKSAGAAMT GKLCDDWRAP  240
LDAAEKAKKS PPAPFASHPS DAALINSYLR PWVIHAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG411800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972087.11e-48NAC domain-containing protein 45-like
TrEMBLA0A3L6QXF61e-82A0A3L6QXF6_PANMI; NAC domain-containing protein 45-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2232157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.17e-07NAC domain containing protein 45