PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG041600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 260aa MW: 28893.8 Da PI: 12.0486 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.6 | 1.7e-10 | 129 | 171 | 8 | 50 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 rr NR +A+rsR RK+++i eLe+ v L++e +aL ++ Pavir.5NG041600.4.p 129 RRILANRQSAQRSRVRKLQYISELERSVTLLQTEVSALSPRVA 171 78889*****************************999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 18 | No hit | No description |
SMART | SM00338 | 3.1E-8 | 125 | 186 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.07E-11 | 127 | 180 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-13 | 127 | 180 | No hit | No description |
Pfam | PF00170 | 4.6E-9 | 128 | 176 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 129 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.841 | 129 | 180 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.24E-21 | 129 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MPATGRTTST ASTTTSSCPC SQTTCRRRRR RHSSSRPLPR PRPWRARRRR PTTTASMTRR 60 RTGARPRRRR ASATGTPPPR RGSRPPPPPQ LIPSASRGDL DSPLNSGNAP PCEAEFTNLL 120 AFPCCHDHRR ILANRQSAQR SRVRKLQYIS ELERSVTLLQ TEVSALSPRV AFLDHQRSLL 180 TLGNSHLKQR IAALAQDKIF KDAHQEALKK EIERLRQIYL QQSLKNAESS PTPDAAPIRS 240 DKDLIASEGT AAPEPCPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 30 | RRRRRR |
2 | 47 | 69 | RRRPTTTASMTRRRTGARPRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.22642 | 8e-90 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG041600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036821 | 1e-134 | BT036821.1 Zea mays full-length cDNA clone ZM_BFb0141B19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968609.1 | 3e-77 | basic leucine zipper 2 | ||||
TrEMBL | K3XK88 | 6e-76 | K3XK88_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J05339.1.p | 3e-83 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 2e-52 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG041600.4.p |