PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG041600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 302aa MW: 32556.2 Da PI: 6.4517

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG041600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.4e-11	178	221	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v L++e +aL + Pavir.5NG041600.2.p 178 KRVKRILANRQSAQRSRVRKLQYISELERSVTLLQTEVSALSPR 221 8999*********************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-13	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.668	176	232	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-13	178	232	No hit	No description
SuperFamily	SSF57959	1.13E-11	178	232	No hit	No description
Pfam	PF00170	5.7E-10	178	228	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.63E-25	179	229	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAQLPPKIPA MAPAWPEFGG GHHHHAHHHQ QRSPSVGTFL AAPMPPQQPT WVEEFLDFTA 60 AKRGAHRRTV SDSVAFLEPG PDDGNAGDGA HDFDRLDDDQ LLSMFSDDLP PPPPPPQQQQ 120 AAPAPAPVAS SSSPSDHNSI NDEKTDRGET EEAQSKCHGD APAAPGQPAS AAAAVDPKRV 180 KRILANRQSA QRSRVRKLQY ISELERSVTL LQTEVSALSP RVAFLDHQRS LLTLGNSHLK 240 QRIAALAQDK IFKDGDRHCR RLPDSNTSPV TIGIQFGAAC MQDCHDDDGV PTRSEPLATS 300 I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.22642	1e-33	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269\|PubMed:18065552}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG041600.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817786.1	1e-128	basic leucine zipper 2-like
Swissprot	Q5QNI5	1e-105	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	A0A2S3HYX3	1e-126	A0A2S3HYX3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DSS5	1e-126	A0A2T7DSS5_9POAL; Uncharacterized protein
STRING	Pavir.J05339.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-68	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG041600.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]