PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG036700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 377aa    MW: 39935.8 Da    PI: 7.1027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG036700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08118138526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck+Gd C FaHg
  Pavir.5NG036700.1.p 118 ACPDFRK-GGCKRGDACDFAHG 138
                          7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.2E-5113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028114140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6117140IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6118138IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258148172IPR000571Zinc finger, CCCH-type
SMARTSM0035612148171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMMMGEGVGV PPWSQHLPVS GVDVGGGDEM TPYLLAALRQ YLPCNDAGAG ADDDEAAAAA  60
AMAAGVDGYG SDEFRMYEFK VRRCARARSH DWTECPFAHP GEKARRRDPR KYHYSGTACP  120
DFRKGGCKRG DACDFAHGVF ECWLHPARYR TQPCKDGTAC RRRVCFFAHT PDQLRVLLAQ  180
QSSPRGAGAA ASPLAESYDG SPLRRQAFET YLTKSIMSSS PTSTLMSPPK SPPSDSPPLS  240
PDGAAAFSRG SWPGVVSPVN EVLASLRQLR LSKANSSPAG GWSGYPSSAV AYGSPTAAGL  300
YSLPSTPTTM GGFMANLEPL DVSFIGGEEE PVQRVESGRA LRAKVFERLS REGAVSGDAT  360
AATGGPDVGW VSDLIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.75860.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG036700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2S3HYP50.0A0A2S3HYP5_9POAL; Uncharacterized protein
STRINGPavir.Eb00253.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-85C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]