PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG640100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 199aa MW: 21439.2 Da PI: 9.6328 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 1.9e-32 | 111 | 169 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrC++++C+vkk+v+r a+d+++v++tYeg Hnh+ Pavir.5KG640100.1.p 111 LDDGYRWRKYGQKAVKNSAYPRSYYRCSHHTCNVKKQVQRLARDTSIVVTTYEGVHNHP 169 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-33 | 98 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-28 | 103 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.633 | 106 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-38 | 111 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 112 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEDSLQGGSQ QKQPNPQLPA MLLASASPVP QLDWASLLLP RAPGSLHDVG ATASQQQAVA 60 GASGGCSSST AGDADGETGA GEKGGGTRGK KKKKATWPRF AFQTRSENDI LDDGYRWRKY 120 GQKAVKNSAY PRSYYRCSHH TCNVKKQVQR LARDTSIVVT TYEGVHNHPC EKLMEALSPI 180 LKQLQLLSQL QCSTNQLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 101 | 168 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-26 | 101 | 168 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG640100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958074 | 1e-118 | EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806667.1 | 1e-103 | probable WRKY transcription factor 48 | ||||
Swissprot | Q9FFS3 | 1e-55 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A2S3HAK7 | 1e-102 | A0A2S3HAK7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03879.1.p | 1e-146 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 1e-46 | WRKY DNA-binding protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG640100.1.p |