PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG581300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 235aa    MW: 24272.5 Da    PI: 9.9843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG581300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-203283156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++++GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Pavir.5KG581300.1.p 32 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                         689*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-143282IPR001471AP2/ERF domain
CDDcd000182.91E-183290No hitNo description
PROSITE profilePS5103223.9473390IPR001471AP2/ERF domain
SMARTSM003805.4E-363396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-323390IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-223391IPR016177DNA-binding domain
PRINTSPR003671.0E-103445IPR001471AP2/ERF domain
PRINTSPR003671.0E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPRSAHKSP VPPATGLGLG VVGGVGGVGM GPHFRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASKCPVAAG AGSPSSNSTV ESGGGGGGCG  120
VQAPMQAMPL PPALDLDLFH RAAAVTAVSP GGMRFPFKGF PVARPTPNPY FFYEQASGYR  180
MLKVAPPPVT VAAVAQSDSD SSSVVDHTPS PPAVTAKKEV SFDLDLNWPP PAEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213191364ATERF1
3gcc_A2e-213191364ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2100.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG581300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7765141e-155KF776514.1 Sorghum bicolor genotype Halepense AP2 domain-containing protein (AP37) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.11e-122ethylene-responsive transcription factor 4
TrEMBLK3XLF61e-121K3XLF6_SETIT; Uncharacterized protein
STRINGPavir.Ea03147.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-21erf domain protein 9