PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG516000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 426aa MW: 47240.1 Da PI: 10.5489 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.4 | 1.7e-20 | 19 | 118 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkvl + ++rl +p +f++++ +ke s+ tle +sgr+W v + r++ +++++t+GW +Fv+++ L+e +f+v Pavir.5KG516000.1.p 19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrkkaRAVKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFLV 103 66777...4455668********888*****999988899*******************..***************************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F++dg+++f +vf+ Pavir.5KG516000.1.p 104 FRYDGDTRF--AAMVFD 118 ****99888..666665 PP | |||||||
2 | B3 | 48.8 | 1.3e-15 | 320 | 406 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ +v s ++++p f ++h ++e ++++l+ + g+ W v +i ++++r l++GW F++ n L+egD +vF+l+g ef +v Pavir.5KG516000.1.p 320 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRVPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RV 402 6788999999*********9995..345679***************4.444455..9***********************997777..99 PP EEE- CS B3 95 kvfr 98 +vfr Pavir.5KG516000.1.p 403 HVFR 406 9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-20 | 14 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-20 | 15 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.83 | 16 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-17 | 17 | 118 | No hit | No description |
Pfam | PF02362 | 7.2E-18 | 19 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-12 | 19 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 309 | 406 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-22 | 310 | 406 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.19E-23 | 314 | 406 | No hit | No description |
PROSITE profile | PS50863 | 13.324 | 316 | 408 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-10 | 316 | 408 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-14 | 318 | 406 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MPAAGRLSPW ATGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKKA RAVKEASMAA 60 TLEGPSGRTW LVVIRRTAEG TFFTSGWPKF VQDQALRELE FLVFRYDGDT RFAAMVFDTS 120 ACEREDLLLG GGGGDPRRGR RGTKRGRATT TGGPSREAAK PKRARKDSVG KELVPYRGAT 180 TAGDRQLQVA CSNRTPESAA GAVKTEMEDA DELALCVVIP APPPPQQDDP APTRRRRGPQ 240 PQDPGAETTR RAVKTRSIHE DLQAAAAPAL AADDADIPAS VRRYRGYVSR RRPATGAERQ 300 LAMELAYAFR SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV LRVPGGKAWV 360 VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVGAAEF RVHVFRVVDP PVPAVRLRSA 420 ASDPI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG516000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003229 | 8e-97 | AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10. | |||
GenBank | AP014957 | 8e-97 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 8e-97 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814249.1 | 0.0 | B3 domain-containing protein Os01g0723500-like | ||||
Swissprot | Q8S2E6 | 0.0 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A3L6SU88 | 0.0 | A0A3L6SU88_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Ea02697.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG516000.1.p |