PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG402900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 226aa    MW: 24477 Da    PI: 6.0383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG402900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-29136194159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+W KYG+K+vk+s++pr+YYrC+ +gC+vkk ver+++d+++v++tY g Hnh+
  Pavir.5KG402900.1.p 136 LDDGYRWHKYGKKMVKNSPNPRNYYRCSRKGCQVKKLVERARDDERFVITTYDGVHNHS 194
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31121194IPR003657WRKY domain
SuperFamilySSF1182907.45E-27128195IPR003657WRKY domain
PROSITE profilePS5081130.377131196IPR003657WRKY domain
SMARTSM007741.2E-32136195IPR003657WRKY domain
PfamPF031064.8E-23137193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSSFESLLEH WIGGGEFVVD DDTEAEAAAA AWSFLSFDIG AGYHPPEPAE EQPAPPLVDA  60
LQAETDHCAS GTAGGSSDGE PGGKQSQTEA SSLALSSEGH GGNGVVVPAV EENKDDGEKT  120
RKKKIAFRTR SEVDVLDDGY RWHKYGKKMV KNSPNPRNYY RCSRKGCQVK KLVERARDDE  180
RFVITTYDGV HNHSAAPPLP HAPRGYRRLL DPPPPPAAQQ GHRVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24126193774Probable WRKY transcription factor 4
2lex_A6e-24126193774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG402900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085225e-75AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418465e-75AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313675e-75CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817843.14e-76probable WRKY transcription factor 50 isoform X3
TrEMBLA0A2T7DKI94e-74A0A2T7DKI9_9POAL; Uncharacterized protein
STRINGPavir.Ea02041.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-36WRKY DNA-binding protein 50