PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG159800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 335aa    MW: 35503.2 Da    PI: 6.8175
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG159800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.27.7e-3114113297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                          lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+++h+  
  Pavir.5KG159800.1.p  14 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGPAFAFRSAHEGA 103
                          79************************99877778*************************************998899************* PP

               DUF573  88 ifelskkiWg 97 
                          i+++++ iW+
  Pavir.5KG159800.1.p 104 IYDVARHIWR 113
                          *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-2715112IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGAGAGAAED SRRLFQRLWT DEEELLILRG FLDFTARRGT TFASHQYDTG PFYEEIRRRL  60
SFDFTKSQLI EKLRRLKKKY RVCAARVAAQ GPAFAFRSAH EGAIYDVARH IWRPAFRRGE  120
GAGPADASDE DDINPAAAAA LPNAVEDGGG GGSASAPTPR GRGGRRVRRR TAQELEAPAL  180
PSTSALMLND VVQEPLVVSV ENLAPAFAPP QVPIVSPVAA TPAPSPMAAN GGGATEEVVR  240
SILSPLLREF ISSVAVAGQA GLGLGFGMGF GGIGGFDILG PGFGAAGPNP GNGMPGDEKW  300
KQQQILELEI YLKRIELVRE QVTAALQELR SSEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419110.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG159800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-178BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-178JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817348.11e-175probable transcription factor At3g04930
TrEMBLA0A2T7DPJ71e-176A0A2T7DPJ7_9POAL; Uncharacterized protein
STRINGPavir.Ea00827.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-34DNA-binding storekeeper protein-related transcriptional regulator