PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG053700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 40386.1 Da PI: 7.1971 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.8e-09 | 122 | 142 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Pavir.5KG053700.1.p 122 ACPDFRK-GGCKRGDACEFAHG 142 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.3E-5 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 121 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-7 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMMMGEGVSV PPWSHHLPVS GVDVGGGTTG GDEMTPYLLS ALHQYLPCND AGAGADDDEA 60 AAAAAMAAGV DGYGSDEFRM YEFKVRRCAR ARSHDWTECP FAHPGEKARR RDPRKYHYSG 120 TACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV 180 LPAQQSSPRG AAAAASPLAE SYDGSPLRRQ AFESYLTKSI MSSSPTSTLM SPPKSPPSES 240 PPLSPDGAAA AFRRGSWPGV GSPVNEVLAS LRQLRLSKAN SSPAGGWSGY PSSAVAYGSP 300 TATGLYSLPS TPTTMGGYMA NLEPLDVSFG GGDEEPVQRV ESGRALRAKV FERLSREGAV 360 SGDATAAIGG PDVGWVSDLI N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7586 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG053700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817903.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 0.0 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2S3HYP5 | 0.0 | A0A2S3HYP5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00253.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-87 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG053700.1.p |
Publications ? help Back to Top | |||
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