PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG053700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 382aa    MW: 40386.1 Da    PI: 7.1971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.8e-09122142526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck+Gd C FaHg
  Pavir.5KG053700.1.p 122 ACPDFRK-GGCKRGDACEFAHG 142
                          7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6121144IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7122142IPR000571Zinc finger, CCCH-type
SMARTSM0035612152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258152176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMMMGEGVSV PPWSHHLPVS GVDVGGGTTG GDEMTPYLLS ALHQYLPCND AGAGADDDEA  60
AAAAAMAAGV DGYGSDEFRM YEFKVRRCAR ARSHDWTECP FAHPGEKARR RDPRKYHYSG  120
TACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV  180
LPAQQSSPRG AAAAASPLAE SYDGSPLRRQ AFESYLTKSI MSSSPTSTLM SPPKSPPSES  240
PPLSPDGAAA AFRRGSWPGV GSPVNEVLAS LRQLRLSKAN SSPAGGWSGY PSSAVAYGSP  300
TATGLYSLPS TPTTMGGYMA NLEPLDVSFG GGDEEPVQRV ESGRALRAKV FERLSREGAV  360
SGDATAAIGG PDVGWVSDLI N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.75860.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2S3HYP50.0A0A2S3HYP5_9POAL; Uncharacterized protein
STRINGPavir.Eb00253.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-87C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]