PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG006100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 647aa    MW: 70343.9 Da    PI: 7.2711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12491537455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Pavir.5KG006100.1.p 491 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 537
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-5185270IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-15490541No hitNo description
SuperFamilySSF474599.29E-19490554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18491550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10491537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MEGIVVITSY YSIDLKAMKV ICTVIMVMKM EMEDDGAVGG TGGTWTEEDR ALGAAVLGTD  60
AFAYLTKGGG AISEGLVAAS LPDDLQNKLQ ELVESEGPGT GWNYAIFWQL SRTKSGDLVL  120
GWGDGSCREP RDGEVGAAAS AGSDDTKQRM RKRVLQRLHI AFGVADEEDY APGIDQVTDT  180
EMFFLASMYF AFPRRAGGPG QVFAAGIPLW IPNNERKVFP ANYCYRGFLA NMAGFRTIVL  240
VPFESGVLEL GSMQHIAESS DTIQTIRSVF TGAGGNKAAV QRHEGNGPTP PERSPGLAKI  300
FGKDLNLGRP SAVPAVGVSK VDERSWEQRA AAAGGTSLLP NVQKGLQNFT WSQARGLNSH  360
QQKFGNGVLI VSNEAAHRSN GAADSPSATQ FQLQKVPQLP KLQLQKLPHI QKTPQLVNQQ  420
PLQPQVPRQI DFSAGSSSKS GVLVTRAAVL DGESAEVDGL CKEEGPPPVI EDRRPRKRGR  480
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQKKL  540
KDMETERERL LESGMVDPRE RGAPRPEVDI QVVQDEVLVR VMSPMESHPV KKVFQAFEEA  600
EVRVGESKVT GNNNGTVVHS FIIKCPGTEQ QTREKVIAAM SRVMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28485547264Transcription factor MYC2
5gnj_B7e-28485547264Transcription factor MYC2
5gnj_E7e-28485547264Transcription factor MYC2
5gnj_F7e-28485547264Transcription factor MYC2
5gnj_G7e-28485547264Transcription factor MYC2
5gnj_I7e-28485547264Transcription factor MYC2
5gnj_M7e-28485547264Transcription factor MYC2
5gnj_N7e-28485547264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472480RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.207500.0callus| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG006100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-71bHLH family protein