PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG271600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 255aa MW: 27165 Da PI: 5.5157 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.3 | 1.4e-17 | 116 | 169 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN +L k+l+e +++ Pavir.4NG271600.2.p 116 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENATLFKQLSEANQQF 169 679*****************************************9888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.5E-18 | 114 | 178 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.679 | 116 | 168 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-15 | 116 | 168 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.3E-14 | 118 | 169 | No hit | No description |
SuperFamily | SSF57959 | 8.13E-13 | 118 | 170 | No hit | No description |
CDD | cd14702 | 1.05E-6 | 119 | 169 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 121 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKKCPSELQL EAFIRESGAG AAESKPGSGP SEPGGSGVFS PGGVGFGDSN TMDGSSWWYG 60 SIRPANPVAS QTASVSASPR ATTPANHTLE SESDSDSESL YEVEGGSCER GTKSMETKRI 120 RRMVSNRESA RRSRRRKQAQ LSELESQVEQ LKGENATLFK QLSEANQQFT TAVTDNRILK 180 SDVEALRVKV KMAEDMVARS AMSCGLGDLG SEAFRGPTAA RQVQNSPVQS TASLESLDNR 240 KSSEVTSCAA DMWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 137 | RRSRRRKQ |
2 | 132 | 137 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14580 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG271600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965642.1 | 1e-150 | bZIP transcription factor RISBZ5 | ||||
Swissprot | Q654B3 | 7e-90 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | K3XYW5 | 1e-150 | K3XYW5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00496.1.p | 1e-161 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-30 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG271600.2.p |
Publications ? help Back to Top | |||
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