PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG057700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 307aa    MW: 32171 Da    PI: 4.5717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG057700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-1994144155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+++AeIrdp++     r++lg+f+taeeAa+ ++  +++l+g
  Pavir.4NG057700.1.p  94 PRYRGVRRRP-WGKYAAEIRDPYK---GERIWLGTFDTAEEAARKYDTEARRLRG 144
                          68********.**********865...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-2994154No hitNo description
PfamPF008472.3E-1194144IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-3095153IPR001471AP2/ERF domain
PROSITE profilePS5103223.27595152IPR001471AP2/ERF domain
SMARTSM003807.5E-3495158IPR001471AP2/ERF domain
PRINTSPR003671.2E-1096107IPR001471AP2/ERF domain
PRINTSPR003671.2E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKQEPVAEPT TIRKLVRIFW DDRDATDSSG DEAGAGDGAG DGTAPRGVRK FVREIRVVEH  60
RAPCKVVTPA PAPAGRVAAG GGKRKAPGVP AAEPRYRGVR RRPWGKYAAE IRDPYKGERI  120
WLGTFDTAEE AARKYDTEAR RLRGPSATTN FPEATPTPVL APPSPHAIPA ARFGVADISS  180
AEESSDESQL VGSPVSVLRA MPGETDAAAA PLALKPTTDA ADSTAKEETS PISADALLPQ  240
LDEEVLPFPG IITAPFGDPA LGVMFEDLAA PQLDHLADDA ALDLPLWPGA SGCSFSDIGG  300
DFFAAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2388153773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG057700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276771e-57KJ727677.1 Zea mays clone pUT5604 AP2-EREBP transcription factor (EREB135) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813270.11e-169ethylene-responsive transcription factor ERF037-like
TrEMBLA0A2S3HLM71e-174A0A2S3HLM7_9POAL; Uncharacterized protein
STRINGPavir.Db02131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-27ethylene response factor 7