PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG310800.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 458aa MW: 48821.2 Da PI: 9.0125

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG310800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.4	6.6e-13	150	192	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 k rr+++NReAAr+sR+RKka+i++Le + + Le+e+++ Pavir.4KG310800.3.p 150 KMLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 192 6789***********************9544489999999864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-9	145	191	No hit	No description
SMART	SM00338	8.2E-5	146	199	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.588	148	178	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-10	150	193	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-7	150	183	No hit	No description
PROSITE pattern	PS00036	0	153	168	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-25	229	300	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MAYPSTSGMV QASASSLHGS IRRDPEGYDM PSDLDQALLL YFDGQQQAAN KPSIQEQQPQ 60 TLNIFPSQPM HIEPPPKGSM SSSAAAAQVA GPSKTSQAAP SKAGGAPLAA GKSSKASIKR 120 EGSAGGKHGG ADGAGPSSSD QEGPRTPDPK MLRRLAQNRE AARKSRLRKK AYIQQLESGR 180 IRLAHLEQEM QMARTHQGAL WGTGTLSPDA ALFNLEYERW LGDHSKVVAR LRAAAEEHRP 240 DGELRAYADE AASHYGALMG LKARAAAADP LHLLSGLWKG AAERCFLWIG GFRPSELINV 300 AVRHVEPLAE QQAAGARDVE QAARRAEEAL DAELEALLRS LSEVVASDAQ QPPGVFGGQL 360 YQHLPGADAA AAAGYMGMGH MHMALAMDKL ATLGTFLRQA DELRMQALQA LRQILTARQA 420 ARCFVAVDDY FCRLRALSTL WTTTRTAAAQ LARGPAG*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MAYPSTSGMV QASASSLHGS IRRDPEGYDM PSDLDQALLL YFDGQQQAAN KPSIQEQQPQ  60
TLNIFPSQPM HIEPPPKGSM SSSAAAAQVA GPSKTSQAAP SKAGGAPLAA GKSSKASIKR  120
EGSAGGKHGG ADGAGPSSSD QEGPRTPDPK MLRRLAQNRE AARKSRLRKK AYIQQLESGR  180
IRLAHLEQEM QMARTHQGAL WGTGTLSPDA ALFNLEYERW LGDHSKVVAR LRAAAEEHRP  240
DGELRAYADE AASHYGALMG LKARAAAADP LHLLSGLWKG AAERCFLWIG GFRPSELINV  300
AVRHVEPLAE QQAAGARDVE QAARRAEEAL DAELEALLRS LSEVVASDAQ QPPGVFGGQL  360
YQHLPGADAA AAAGYMGMGH MHMALAMDKL ATLGTFLRQA DELRMQALQA LRQILTARQA  420
ARCFVAVDDY FCRLRALSTL WTTTRTAAAQ LARGPAG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.27629	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG310800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055042	0.0	BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBank	KJ727604	0.0	KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965885.1	0.0	transcription factor TGAL8 isoform X1
Swissprot	Q69T21	1e-178	TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBL	K3XWV9	0.0	K3XWV9_SETIT; Uncharacterized protein
STRING	Pavir.Db00756.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	7e-75	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG310800.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]