PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG141300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 193aa    MW: 21513.4 Da    PI: 11.2082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG141300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001184106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg++F +   L  H  +H
  Pavir.4KG141300.1.p  84 FECRTCGRRFATFQALGGHRTSH 106
                          89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.38E-783149No hitNo description
PfamPF139121.1E-983108IPR007087Zinc finger, C2H2
SMARTSM003550.3884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.384111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139123.8E-9126151IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162127154IPR007087Zinc finger, C2H2
SMARTSM003551.6127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMRARDDTDV MEPRNDVLHV HRREEGEHQE HGHQSAAFFD DDAFLSLSSS SSCSAAEPAA  60
ATAAPPPHNN KRCLRRRRRR QDAFECRTCG RRFATFQALG GHRTSHLRRR PPAATKSHRP  120
KQPVAAHACA ACGLGFPTGQ ALGGHMRRHR RAKCMGSDDV GFTQIIMFDR PRSASLQLLD  180
LFVPLKINKK KN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179RCLRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG141300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703899.11e-37zinc finger protein ZAT11
RefseqXP_021317868.12e-37zinc finger protein ZAT5-like
TrEMBLA0A3L6Q4K82e-48A0A3L6Q4K8_PANMI; Zinc finger protein ZAT11-like
STRINGPavir.Da01393.1.p3e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.13e-21C2H2 family protein