PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG125000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 16143.3 Da PI: 10.7697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg+ F + L H +H Pavir.4KG125000.1.p 45 FRCRTCGRQFATFQALGGHRTSH 67 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 17.7 | 9.7e-06 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Pavir.4KG125000.1.p 95 HRCNSCGMVFPTGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-9 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.07E-7 | 45 | 117 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-11 | 94 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MATTTARSTP EFLKLYLSLS TASKVIAKGA GGRRNLMAAA GGGAFRCRTC GRQFATFQAL 60 GGHRTSHNRP RVRADGLELL LGARPGKGAA ASDVHRCNSC GMVFPTGQAL GGHMRRHRAA 120 AFDAAAAPME EGDSESDDAG QHLMTNHTLF QFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG125000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828381.1 | 1e-58 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9LX85 | 9e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A2S3IFT9 | 3e-57 | A0A2S3IFT9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PK63 | 3e-57 | A0A3L6PK63_PANMI; Zinc finger protein ZAT8-like | ||||
STRING | Pavir.Da01563.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 8e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG125000.1.p |