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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG309700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41334.9 Da PI: 8.4782 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.3 | 5.8e-18 | 38 | 125 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 fk + + +++g ++p kfa++++g+ +++ l+ +sg++W + + +k++++ +l +GW++Fvka++L+e+D ++F+ g+s+f Pavir.3NG309700.1.p 38 FKLM-T-GDFAKG-TSIPEKFAQNFKGQITGG--FELKAPSGKTWHISV--DKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 119 5555.3.334444.69******9998887787..7777***********..*******************************9999999. PP .EEEEE- CS B3 92 lvvkvfr 98 v vf+ Pavir.3NG309700.1.p 120 -QVLVFE 125 .888776 PP | |||||||
2 | B3 | 48.7 | 1.4e-15 | 254 | 352 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f++vl++++v ++ + l++p +fa++h +e+s +++l+ ++ +W +++ y+++ r++ +Fv++n+L+egD++vF+l++ Pavir.3NG309700.1.p 254 FVTVLKKKHVQRNnNSLIIPSRFAADHL--EERSHDIILRRPNRkDKWLIRYYYSGY-VRCFQNLAFFKFVRDNKLREGDICVFELMKGk 340 78889999998886889*********95..347789*****65549******66555.4677788899*****************99777 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++++v+v+rk Pavir.3NG309700.1.p 341 MRATMTVHVIRK 352 *********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-22 | 30 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.324 | 34 | 127 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-16 | 36 | 124 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-21 | 36 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.4E-11 | 37 | 127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 37 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 246 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-18 | 247 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-15 | 252 | 351 | No hit | No description |
SMART | SM01019 | 1.1E-8 | 254 | 353 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 254 | 352 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.053 | 255 | 353 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MQQEHGQASM VEKGCDSCRK WQEHYYWEHM DVSKIRFFKL MTGDFAKGTS IPEKFAQNFK 60 GQITGGFELK APSGKTWHIS VDKRGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ 120 VLVFEASGCE RVSSMFGDRI CPDMCKHVKN IAGQHGKHCS VNDSEDTTIP SQLVRSPHNA 180 SSSKKLSGKT KPSEYEAPTT SNFMVKHSAN SDDSSDDEFA NSNCYYSMSA NRLRDEEKEE 240 IIGLASIQRN NPAFVTVLKK KHVQRNNNSL IIPSRFAADH LEERSHDIIL RRPNRKDKWL 300 IRYYYSGYVR CFQNLAFFKF VRDNKLREGD ICVFELMKGK MRATMTVHVI RKASGQFILV 360 G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35532 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG309700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 1e-36 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808344.1 | 0.0 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 1e-129 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2T7EIP4 | 0.0 | A0A2T7EIP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00511.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG309700.1.p |