PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 357aa    MW: 40773 Da    PI: 8.6347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.8e-1630115298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk +     +++g +++p kfa++++g   +   + l+ +sg++W++ +  +k+ ++  l + W++Fvka++L+e+D +vF+ +g+s+  
  Pavir.3NG309300.1.p  30 FKLM--TGDFAQG-ISIPEKFAKNFDGT--R--SIDLKAPSGETWNIGV--DKHVDELCLVSRWEDFVKAHRLRENDLLVFTCSGNSSS- 109
                          5555..4455555.9*******888766..4..59**************..*******************************9999665. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                            v +f+
  Pavir.3NG309300.1.p 110 -DVLIFE 115
                          .566665 PP
2B341.22.9e-13249347199
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                          f++vl +s+v ++ + lv+p +f+++h  +  +  ++tl    +  +W vk++y  + ++   y+     + Fv++n+L+egD++ F+l+
  Pavir.3NG309300.1.p 249 FVTVLQKSHVRRKsNFLVFPSRFVADHLAS--RLHEITLVRpNRKDKWCVKYSYALGAQGirnYT----FSMFVQENRLCEGDICAFELM 332
                          77888889988775889**********544..34478888835669********55555522254....56*****************99 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          +  ++ +++v+++rk
  Pavir.3NG309300.1.p 333 KGaRRVTMTVHAIRK 347
                          777999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.74426117IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-1628121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-1728118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-1528114No hitNo description
SMARTSM010198.0E-829117IPR003340B3 DNA binding domain
PfamPF023623.9E-1329114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16241346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-14244346IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-12247346No hitNo description
SMARTSM010194.0E-8249348IPR003340B3 DNA binding domain
PfamPF023629.0E-12249347IPR003340B3 DNA binding domain
PROSITE profilePS508638.995250346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMVEKECESC RKWQEHYYWE HLDVTKIRFF KLMTGDFAQG ISIPEKFAKN FDGTRSIDLK  60
APSGETWNIG VDKHVDELCL VSRWEDFVKA HRLRENDLLV FTCSGNSSSD VLIFEASGYE  120
KVSSLFGNST GPDMRKHFDD MADRGKPGKQ AEHYARTDSE DTTTTPSHLA GFPHHASTSK  180
KPGSRKPRQI LESPKSSSVK HDAIGEEESG EEHTNSNYYY YSRIANRLSD EEKEKIISLA  240
SIRPDNPAFV TVLQKSHVRR KSNFLVFPSR FVADHLASRL HEITLVRPNR KDKWCVKYSY  300
ALGAQGIRNY TFSMFVQENR LCEGDICAFE LMKGARRVTM TVHAIRKVDG RFVRLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50950.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-122Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP10.0A0A2T7EIP1_9POAL; Uncharacterized protein
STRINGPavir.Cb00421.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-30B3 family protein