PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG228900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26362.9 Da PI: 6.5237 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.6 | 1.8e-24 | 12 | 60 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien+ rqvtfskR+ g+ KKA EL vLCda+va+i+fs +g+l++++ Pavir.3NG228900.1.p 12 RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDFA 60 8**********************************************97 PP | |||||||
2 | K-box | 87.4 | 2.9e-29 | 90 | 176 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ + +++ e+ kLk+++e Lq++qR+l+Ge+LesL+++e qqLeqq++++l++iRs+K+++l+++ieel+kke+ l e+n+ L+k+ Pavir.3NG228900.1.p 90 EEMEGNMSYEHIKLKSKVEALQKSQRNLMGEQLESLTFREVQQLEQQIDSALRNIRSRKDHVLFNSIEELRKKERFLMEQNTLLEKE 176 566789****************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.931 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-29 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-28 | 4 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.43E-35 | 4 | 76 | No hit | No description |
PRINTS | PR00404 | 1.4E-25 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-25 | 91 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.58 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGRGKVEV RRIENSVSRQ VTFSKRLRGL AKKARELAVL CDADVALIVF SDKGRLHDFA 60 AHDGSMERIL DRYERYLLCE GGDVMENHPE EMEGNMSYEH IKLKSKVEAL QKSQRNLMGE 120 QLESLTFREV QQLEQQIDSA LRNIRSRKDH VLFNSIEELR KKERFLMEQN TLLEKEKAAL 180 DPSLHAKNSA ASSTSAQGAV PNLNICAGGG SDDEPAPPAA PYGAEAGLPW WMLEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-17 | 4 | 76 | 2 | 72 | Myocyte-specific enhancer factor 2B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG228900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975067 | 1e-172 | EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962945.1 | 1e-138 | MADS-box transcription factor 20 | ||||
Swissprot | Q2QQA3 | 5e-78 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A3L6SU34 | 1e-138 | A0A3L6SU34_PANMI; MADS-box transcription factor 20-like | ||||
STRING | Pavir.Cb00838.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14643 | 21 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-55 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG228900.1.p |