PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG568000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 275aa    MW: 30587.6 Da    PI: 8.5963
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG568000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-18133215291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          fY++YA+ +GFs+r+++++k+       ++++vCs+eg +e ++ + e +++++  +r+gC a +kvk +k +g w+ +++++ HnH+l 
  Pavir.3KG568000.1.p 133 FYRDYARLAGFSLRTARTSKE-------TNHWVCSREGWHEGKRGE-EPNKTEKGLKRCGCPAYVKVKHDKkRGLWYFDHVQQAHNHKLE 214
                          9**************998887.......5689********999988.999*******************999****************97 PP

                 FAR1  91 p 91 
                          p
  Pavir.3KG568000.1.p 215 P 215
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-14133215IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTPPSLIQPP SPPPAPHHDS QALVALGDYT AAFRTRCSSD GGANAPLSMV SLSTVAAPTT  60
TPATALAPTQ NSEVESADLL HHVTTLTPPA ALPPGSLQTP DAAQVVYPDP NIAPVFVPRV  120
RQVFPTKDDA YMFYRDYARL AGFSLRTART SKETNHWVCS REGWHEGKRG EEPNKTEKGL  180
KRCGCPAYVK VKHDKKRGLW YFDHVQQAHN HKLEPSPRMT RYMHEHKNME EGMYDIFNIM  240
TRNGVSHQAT LNVMADLYDG RHMWGFTEKN IKNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG568000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395680.12e-89protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A3L6RHU11e-114A0A3L6RHU1_PANMI; Protein FAR1-RELATED SEQUENCE 11-like
STRINGPavir.Fb02178.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4123722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-10FAR1-related sequence 10