PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG488000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 355aa    MW: 40895.2 Da    PI: 8.7083
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG488000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-1830117199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk +     +++g +++p +fa++++   ++   + l+ +sg++W++ +  +k++++ +l + Wk+Fvka++L+e+D +vF+ +g  +f
  Pavir.3KG488000.1.p  30 FFKLM--TGDFANG-ISIPERFAKNFN-R-TG--SIDLKAPSGETWNIGI--DKHDDELFLVSRWKDFVKAHRLRENDLLVFTCSG--NF 108
                          55655..4455565.9*******6665.2.35..59**************..*******************************766..56 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++ v++f++
  Pavir.3KG488000.1.p 109 SFDVMIFEA 117
                          668998876 PP
2B339.78.4e-13247345199
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                          f++vl  s+v ++ + l++p +f+++h  +++   ++tl    +  +W vk+ y  + ++   y      + Fv++n+L+egD++ F+l+
  Pavir.3KG488000.1.p 247 FVTVLQMSHVRRKsNFLIFPSRFVADHL-DTRL-HEITLVRpNRKDKWCVKYAYAHGAQGirnY----TFSMFVQENRLREGDICAFELM 330
                          5566666666655478899*****9994.3334.488888835669******997777773334....567*****************99 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          +  ++ +++v+++rk
  Pavir.3KG488000.1.p 331 KGaRRVTMTVHAIRK 345
                          777999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.77427118IPR003340B3 DNA binding domain
CDDcd100173.67E-1729115No hitNo description
Gene3DG3DSA:2.40.330.108.8E-1829119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1829122IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1430117IPR003340B3 DNA binding domain
SMARTSM010191.0E-1230118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16239344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14240344IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-13245344No hitNo description
PfamPF023629.6E-12247345IPR003340B3 DNA binding domain
SMARTSM010195.3E-8247346IPR003340B3 DNA binding domain
PROSITE profilePS508639.756248344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRMAEKGCES CRKWQEHYYW EHMDVTKIRF FKLMTGDFAN GISIPERFAK NFNRTGSIDL  60
KAPSGETWNI GIDKHDDELF LVSRWKDFVK AHRLRENDLL VFTCSGNFSF DVMIFEASGY  120
EKVSSLLGNS TGTDMRKRFD DMADRGKPGK QAEHYALTHS EDATHLAGFP HHACTSKKSG  180
SRNSRQMPES SNSSSDHVKH DAICKEESDE ECTNSNYYYS RIANRLSDEE KEKITSLASI  240
RPDNPAFVTV LQMSHVRRKS NFLIFPSRFV ADHLDTRLHE ITLVRPNRKD KWCVKYAYAH  300
GAQGIRNYTF SMFVQENRLR EGDICAFELM KGARRVTMTV HAIRKVDGWF VRLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50950.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG488000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-123Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP10.0A0A2T7EIP1_9POAL; Uncharacterized protein
STRINGPavir.Ca02538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-31B3 family protein