PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG487800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 551aa    MW: 62563.9 Da    PI: 10.0818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG487800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-1872161199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkvl     +k+g l++p+kf++++   ++ s +++le ++g++++v++   +  ++ vl++GW++F  a +Lk gD +vF+ +++s f
  Pavir.3KG487800.1.p  72 FFKVL--MGDFKNG-LTIPRKFVANIR--EHLSEEVKLEAPDGKTYTVQV--AREHNELVLRSGWSDFSCAYELKLGDLLVFRNSDKSHF 154
                          77888..5566666.********8886..458889***************..*******************************5444666 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v++f+ 
  Pavir.3KG487800.1.p 155 --KVRIFDP 161
                          ..9999986 PP
2B341.23e-132903661290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           sg+l ++k++a +h  +k  s  ++l +++g ++W ++l +  + ++ +  ++GW +F ++n+L+egD+++F+ ++++++
  Pavir.3KG487800.1.p 290 VSGILAISKDYAMKHLANK--SGIIQLSQLDGsKTWAINLDI--TTKGdCAVSTGWMDFIRDNKLREGDICIFQPSKSKNG 366
                          45789**********6664..4489****9999*******44..3333377889********************8776554 PP
3B353.63.9e-17440532898
                          -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          s++ ++  ++l + +++a+++   ++es+t++l+ +      +We  l  r + +ry+l++GW++Fv++n+Lk gD ++F l+ + ++ +
  Pavir.3KG487800.1.p 440 SNTARNnmCLLEFGRDYATKY--LPPESQTMRLRRPGPfkdGTWEAVL--RVQNRRYILGRGWRQFVDDNKLKPGDLCLFNLMTNtKQLT 525
                          333333224445555556555..456888*****9876777*******..999999***************************888**** PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          ++v+++r
  Pavir.3KG487800.1.p 526 MNVHIIR 532
                          ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-2268164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-2368164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81669162IPR003340B3 DNA binding domain
CDDcd100175.16E-2270160No hitNo description
SMARTSM010193.8E-1472162IPR003340B3 DNA binding domain
PfamPF023621.7E-1572160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15272364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16273364IPR015300DNA-binding pseudobarrel domain
CDDcd100174.27E-11278358No hitNo description
PROSITE profilePS5086311.575279376IPR003340B3 DNA binding domain
SMARTSM010192.2E-5281373IPR003340B3 DNA binding domain
PfamPF023623.4E-10287366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-19425532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-20426532IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-15431532No hitNo description
SMARTSM010194.2E-5433534IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337435534IPR003340B3 DNA binding domain
PfamPF023624.8E-15439532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MPCSIQLITV RDAVKISQII LKQCTVLLSL LGYQNTVQDH RRGGNRMNKS HTVCKECIAN  60
HYWHHMDDRK RFFKVLMGDF KNGLTIPRKF VANIREHLSE EVKLEAPDGK TYTVQVAREH  120
NELVLRSGWS DFSCAYELKL GDLLVFRNSD KSHFKVRIFD PSGCEKELSC VLMDGGPCVQ  180
ERKVSNGNHM QSSTGKRFAI GNPSVSKKTS KTNPTDSPSQ KKNEHVPSSE GTQKPTNSGG  240
GVQKRTKSCI VLPTGYDMTS EQRAQITTLE QKIQPEPPFY ITAMHRRSVV SGILAISKDY  300
AMKHLANKSG IIQLSQLDGS KTWAINLDIT TKGDCAVSTG WMDFIRDNKL REGDICIFQP  360
SKSKNGVTLI YHPLEENHRL QPLGHIPSTK TMSPRHGVPK PPYILPWRRT LSDQQMSELD  420
KKVEAIQSKI PIYVAVMHNS NTARNNMCLL EFGRDYATKY LPPESQTMRL RRPGPFKDGT  480
WEAVLRVQNR RYILGRGWRQ FVDDNKLKPG DLCLFNLMTN TKQLTMNVHI IRLRERSTTR  540
LVDRHQSCSC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG487800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808338.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_025808339.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT61e-160Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A3L6T2R00.0A0A3L6T2R0_PANMI; Uncharacterized protein
STRINGPavir.Cb00423.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-27B3 family protein