PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG371700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 599aa MW: 65436.6 Da PI: 7.3189 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 125 | 148 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 + t++C f+ + G+C+ G++C F H Pavir.3KG371700.1.p 125 WATKICTFYTQ-GWCNKGNSCAFLH 148 5699***9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-7 | 121 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-7 | 124 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MGSAGGRVGA TDQIPEVEMD VVEGAPEEPG RVGSKRVRDS PSALGSHGFY GVTTAEKKPM 60 LQPHNVDKSL SKAGNSNLLH MNSDGASKMG GRYLRGADGL GTPDSIALRL NISSPCENLE 120 NETKWATKIC TFYTQGWCNK GNSCAFLHER EGGFAKAGLL APPGFENHRG SEEGSQVQHQ 180 SNLKVLQFKD AEGSSKDERY RRLIHAYGED NVRLAHIADK RNSTTPGISQ GLHGTGSMEH 240 SLVVHEKTNK PFMRHHTGLS PETYLDGRHI LLDGGDFESG MDRRNDFSNA HVARTYLDVN 300 TLNSGHQFRS SGLSISSDPF QLSEKLSAYG ATTDNLSNTH QKEHHSSLAS YSSHGLTGFR 360 NPGYAASETS RPALLSSSSS EPYIMSAGPL SPIKDEVWVT SVPFVPSFSF PDSTTPPGSQ 420 YDPFVDCIEP PKVGDTDNLK SSNVSFSTSS QHTNQYVITD ESLNPDDKLT RNMSAKGANG 480 SAYLISADRV RSSSLDDYNR LKAHDRKICA ASNEEKARDF RFHLAEHIKE LVKPIWKEGN 540 LSKDAHKLVV KKSVEKIVDS IRPNQMPTSE ELIAKYITTS GSKIEKLVKA YVDRHRTT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.44808 | 1e-139 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG371700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806080.1 | 0.0 | zinc finger CCCH domain-containing protein 36-like | ||||
Swissprot | Q75K81 | 1e-150 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A2S3HAT3 | 0.0 | A0A2S3HAT3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01361.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG371700.1.p |
Publications ? help Back to Top | |||
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