PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG330800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 206aa    MW: 22445.2 Da    PI: 9.4174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG330800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.9e-33118176159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Pavir.3KG330800.1.p 118 LDDGYRWRKYGQKSVKNSAYPRSYYRCTHHTCNVKKQVQRLARDTSIVVTTYEGVHNHP 176
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33104176IPR003657WRKY domain
SuperFamilySSF1182901.01E-28110177IPR003657WRKY domain
PROSITE profilePS5081128.908113178IPR003657WRKY domain
SMARTSM007743.7E-38118177IPR003657WRKY domain
PfamPF031068.2E-26119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEDSPQGGSS QQQPEPQLLP APARLLASAS QVPQLDWASL LLPRVPGSLH DVGAMSSQQQ  60
EMAGASGCSS STAGDGDGET EAGEKSGGGT KGDKKKTKKK KVSRPRFAFQ TRSENDILDD  120
GYRWRKYGQK SVKNSAYPRS YYRCTHHTCN VKKQVQRLAR DTSIVVTTYE GVHNHPCEKL  180
MEALSPILKQ LQLLSQLQCS TNQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-26108175774Probable WRKY transcription factor 4
2lex_A5e-26108175774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG330800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-127EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806667.11e-103probable WRKY transcription factor 48
SwissprotQ9FFS32e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2S3HAK71e-101A0A2S3HAK7_9POAL; Uncharacterized protein
STRINGPavir.Ca01507.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-47WRKY DNA-binding protein 24