PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG313200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 293aa    MW: 31327.9 Da    PI: 5.3552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG313200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.7e-25115176159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++ g+ +pr+Y+rCt++   gCp++k+v+r++ dp + +++Y+g H + 
  Pavir.3KG313200.1.p 115 LDDGLSWRKYGQKDILGAMYPRAYFRCTHRysqGCPATKHVQRADGDPLLYDVVYHGAHVCA 176
                          58***************************99999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26102177IPR003657WRKY domain
SuperFamilySSF1182903.27E-24109176IPR003657WRKY domain
PROSITE profilePS5081121.689110173IPR003657WRKY domain
SMARTSM007748.0E-38115177IPR003657WRKY domain
PfamPF031068.5E-24116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDGCGGGGEK RALASELTQV QAMVRELEAR MDQDLPAAAR ELCGELASSV DRSIRIARAC  60
GWDSPGSRDG SPRSDGAPHP AAGAGGCNAQ SKRRKGTPCV RAQVRVAAVQ DMAPLDDGLS  120
WRKYGQKDIL GAMYPRAYFR CTHRYSQGCP ATKHVQRADG DPLLYDVVYH GAHVCAQAAH  180
PAAEHLRRQL QPEGHADVGQ ELSSPLAPEA EGLQAELEPI APYSFAPAPG AGADVGGYFP  240
LLSPTGLEWQ LRSSYAAGGL GIGMDYEPHF EEFYTNAADP FQWEYQDLYA AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20115175868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG313200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586190.0KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.10.0probable WRKY transcription factor 30
TrEMBLA0A2T7EA470.0A0A2T7EA47_9POAL; Uncharacterized protein
STRINGPavir.J03334.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-25WRKY family protein