PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG267100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 356aa MW: 40567.8 Da PI: 6.9239 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 9.2e-18 | 38 | 125 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 fk + + +++g ++p kfa++++g+ +++ l+ +sg++W + + +k++++ +l +GW++Fvka++L+e+D ++F+ g+s+f Pavir.3KG267100.1.p 38 FKLM-T-GDFAKG-TSIPEKFAQNFKGQITGG--FELNAPSGKTWHISV--DKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 119 5555.3.334444.69******9998887787..7788***********..*******************************9999999. PP .EEEEE- CS B3 92 lvvkvfr 98 v vf+ Pavir.3KG267100.1.p 120 -QVLVFE 125 .888776 PP | |||||||
2 | B3 | 45.7 | 1.1e-14 | 248 | 346 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f++vl++ +v ++ + l++p +fa++h +e+s++++l+ ++ +W v + y + r++ +Fv++n+L+egD++vF+l + Pavir.3KG267100.1.p 248 FVTVLKKQHVQRNnNSLIIPCRFAADHL--EERSQDIILRRPNRkDKWLVSY-YYSCYTRCFQNLPFFKFVRDNKLREGDICVFELLKGk 334 78888888998886889**********6..347889*****65549******.5555556666667999****************88666 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +++v+v+rk Pavir.3KG267100.1.p 335 MRVTMTVHVIRK 346 *********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-21 | 30 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.225 | 34 | 127 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.58E-15 | 36 | 124 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 36 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-9 | 37 | 127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-15 | 37 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-20 | 240 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-18 | 241 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-15 | 246 | 345 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 248 | 347 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-13 | 248 | 346 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.503 | 249 | 347 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MQQEHGQASM VEEGCDSCRK WQEHYYWEHM DVSKIRFFKL MTGDFAKGTS IPEKFAQNFK 60 GQITGGFELN APSGKTWHIS VDKRGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ 120 VLVFEASGCE RVSSMFGNQI GPDMCKHVKN IVGQHGKHCP VNDSDDTTTP SQLVGSPHNA 180 SSSKKLGEPD APNTSNFIVN YSANSDDGSD DDFANSNCYY SMFANRLRDE EKEEIIGLAS 240 IQRNNPAFVT VLKKQHVQRN NNSLIIPCRF AADHLEERSQ DIILRRPNRK DKWLVSYYYS 300 CYTRCFQNLP FFKFVRDNKL REGDICVFEL LKGKMRVTMT VHVIRKASDR FILVG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35532 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG267100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808344.1 | 0.0 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 1e-131 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2T7EIP4 | 0.0 | A0A2T7EIP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00511.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG267100.1.p |