PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG163300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 206aa MW: 21971.1 Da PI: 7.4429 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.3e-30 | 112 | 170 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh Pavir.3KG163300.1.p 112 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 170 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-33 | 100 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-28 | 104 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.996 | 107 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-35 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 113 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAASLGLNPE ALFSSHSSSY SSPFMSGYAP QRFPAADNTV VDDAAAFSSE LDDLCQLEYS 60 PAPLIAGAGA GAGGGAGDDR DEKPMWCGGR DEKRPRSSGR IGFRTRSEVE ILDDGFKWRK 120 YGKKAVKNSP NPRNYYRCSS EGCGVKKRVE RDRDDPRYVI TTYDGVHNHA SPGAAAIIQY 180 GGGGFYSPQH SGSPSAASYS GSYLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 97 | 172 | 2 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 97 | 172 | 2 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG163300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058609 | 1e-162 | KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809689.1 | 1e-118 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2S3H903 | 1e-117 | A0A2S3H903_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E8Z3 | 1e-117 | A0A2T7E8Z3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01028.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 8e-41 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG163300.1.p |