PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG125200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 454aa MW: 50426.6 Da PI: 11.1641 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.3 | 1.6e-21 | 174 | 244 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + Pavir.3KG125200.1.p 174 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQAQGFARTPDQCKSKWKNLVTRFKGTEAAAAAH 244 7***************************************************************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0069 | 171 | 233 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.98E-21 | 173 | 238 | No hit | No description |
Pfam | PF13837 | 2.6E-16 | 174 | 242 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-4 | 174 | 230 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.654 | 175 | 231 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MPRRPAGRPP GSPPPGRERG AAPANGGCPA GWPLALPPRR PVACSAGHAT RRRRGPPSGR 60 DKLAADARAA ARERERKKNW RRCSLSAIWR YFAAKEDSRG RTGSACLLRR AGVRVTPPRT 120 QAVGPASTQR ARRRQARRIL CERRRLAPYC AVRRLGASSN GNAAPQPSAE RLPQWSHAET 180 AAFLAVRAEL DHSFLTTKRN KALWEAVSAR LQAQGFARTP DQCKSKWKNL VTRFKGTEAA 240 AAAHPPPDAD PASAAAAAQQ ARQFPFHDEM RRIFDARVEW AQALERKRAK GKDVQPEDEE 300 GRGEGEEDDE EEEELEAEMG EEEPGSRVAS EARSGGGGAK KRRRKQAAAA AAAAARARSA 360 DQGEVEAMLR DFMRRQVEME ERWMEAAEAR EAERRAREEE WRNAMVALGE ERLALVRRWR 420 EREEAWRARA EEREERRHQL VAALLAKLGG DSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 344 | KKRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG125200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU946342 | 5e-95 | EU946342.1 Zea mays clone 305005 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680762.1 | 1e-100 | trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A2T8KHR7 | 1e-135 | A0A2T8KHR7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00737.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-28 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG125200.1.p |