PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG125200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 454aa    MW: 50426.6 Da    PI: 11.1641
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG125200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.31.6e-21174244171
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ +  +
  Pavir.3KG125200.1.p 174 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQAQGFARTPDQCKSKWKNLVTRFKGTEAAAAAH 244
                          7***************************************************************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0069171233IPR001005SANT/Myb domain
CDDcd122032.98E-21173238No hitNo description
PfamPF138372.6E-16174242No hitNo description
Gene3DG3DSA:1.10.10.608.8E-4174230IPR009057Homeodomain-like
PROSITE profilePS500907.654175231IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPRRPAGRPP GSPPPGRERG AAPANGGCPA GWPLALPPRR PVACSAGHAT RRRRGPPSGR  60
DKLAADARAA ARERERKKNW RRCSLSAIWR YFAAKEDSRG RTGSACLLRR AGVRVTPPRT  120
QAVGPASTQR ARRRQARRIL CERRRLAPYC AVRRLGASSN GNAAPQPSAE RLPQWSHAET  180
AAFLAVRAEL DHSFLTTKRN KALWEAVSAR LQAQGFARTP DQCKSKWKNL VTRFKGTEAA  240
AAAHPPPDAD PASAAAAAQQ ARQFPFHDEM RRIFDARVEW AQALERKRAK GKDVQPEDEE  300
GRGEGEEDDE EEEELEAEMG EEEPGSRVAS EARSGGGGAK KRRRKQAAAA AAAAARARSA  360
DQGEVEAMLR DFMRRQVEME ERWMEAAEAR EAERRAREEE WRNAMVALGE ERLALVRRWR  420
EREEAWRARA EEREERRHQL VAALLAKLGG DSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG125200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463425e-95EU946342.1 Zea mays clone 305005 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680762.11e-100trihelix transcription factor GT-3b-like
TrEMBLA0A2T8KHR71e-135A0A2T8KHR7_9POAL; Uncharacterized protein
STRINGPavir.Ca00737.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-28Trihelix family protein