PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG048800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 148aa MW: 16043.5 Da PI: 4.6244 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 68.3 | 1.5e-21 | 2 | 144 | 226 | 373 |
GRAS 226 evLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310 ++L vk l+Pk+v+++eqe +d++ ++F+e f+e ++++a+++sle+ + vE+e lg+ i+++v + + Pavir.3KG048800.1.p 2 QLLGSVKILRPKLVILIEQEpfrIDRGLAPFAEFFCEVQQHFAAMLESLESCFRDGGygACLGPVEKETLGPMIEDAVRQYEPL----AG 87 5899****************98889999************************977767777889**************988776....22 PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + e GF++ +ls+++++q k+l ++ +g+ v +e+g l l+W++rpL+svS+W Pavir.3KG048800.1.p 88 -----GAGAELEGFRACELSSFNVAQGKMLAGLFS-RGFGVAQEEGRLALCWNSRPLTSVSVW 144 .....3456889**********************9.*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.1E-19 | 2 | 144 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MQLLGSVKIL RPKLVILIEQ EPFRIDRGLA PFAEFFCEVQ QHFAAMLESL ESCFRDGGYG 60 ACLGPVEKET LGPMIEDAVR QYEPLAGGAG AELEGFRACE LSSFNVAQGK MLAGLFSRGF 120 GVAQEEGRLA LCWNSRPLTS VSVWSPV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG048800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809510.1 | 2e-93 | nodulation-signaling pathway 2 protein-like isoform X1 | ||||
Refseq | XP_025809511.1 | 1e-93 | nodulation-signaling pathway 2 protein-like isoform X2 | ||||
TrEMBL | A0A3L6R6F6 | 2e-92 | A0A3L6R6F6_PANMI; Nodulation-signaling pathway 2 protein-like | ||||
STRING | Pavir.Ca00212.1.p | 2e-99 | (Panicum virgatum) | ||||
STRING | Pavir.Ca00290.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17114 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-09 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG048800.1.p |