PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG646200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 440aa    MW: 48094.9 Da    PI: 9.5435
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG646200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.9e-3581180297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                          lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  +sf+++h+q 
  Pavir.2NG646200.1.p  81 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRHRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQA 170
                          79************************99877778***************************************8999************* PP

               DUF573  88 ifelskkiWg 97 
                          ife+++ iW+
  Pavir.2NG646200.1.p 171 IFEIARNIWR 180
                          *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-3182179IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPPTGDDPSS AAGISFPGVD GGGGGDSEDA DFTGAHLLDP TDPNLPNPTT SSATGLPHAV  60
SAGGSGGGPI TSGNGGERRP LFQRLWTEED EIVILRGFAE FTAARGTAFA SHQYDTDPFY  120
EDMRHRLQLD FSKSQLVEKL RRLKRKYRNC VSRLRESGAT FSFRSPHEQA IFEIARNIWR  180
PTNKHSRDPS ADSDDEDAAA NTSPNGEVKS PSSRRQRRRR RATDFAAAAG TAPATGMVQP  240
PQPVQSLVSV PVKMEDSLPA LPQNPMPVMV TMDGSEPLRL PVMSPQSGVS DAEKSCLTPL  300
LKERMRAVIN VGTNPFGKKW RKQRILELEV YLKRIELLQD QAKATLEELN ASSPPRTRSG  360
RVKRRRDADG GSCGVGAWPS PSTSSSSPSP YRMEASAMDA ELRRVVDENR RLRGILQELT  420
RNYGTLYQQL LQVTQHPPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218RRQRRR
2213220RRQRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.257643e-53root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG646200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBankJX4284550.0JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
GenBankKJ7267970.0KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799483.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGPavir.Ba00022.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-34DNA-binding storekeeper protein-related transcriptional regulator