PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG570000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 24336.5 Da PI: 9.1981 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++++ L H +H Pavir.2NG570000.1.p 93 YECSVCGKVYPSYQALGGHKTSH 115 99**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.022 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.3E-14 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.22E-8 | 93 | 115 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.22E-8 | 150 | 177 | No hit | No description |
Pfam | PF13912 | 7.9E-12 | 154 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 155 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSLAMSLDAG LDVSSKPPVP PPSPPRVDSW ARGGRRSKRR AGSPSGGGGA EQSEEEYLVL 60 SLLMLSRGVR GDAGDGGGVV AAAKGAAKAG QGYECSVCGK VYPSYQALGG HKTSHRKPPT 120 PTPTPAPQPA AAAAPAGDEA APLGGGVAHA EEKVHQCSLC LRTFPSGQAL GGHKRLHYEG 180 GGAAGADGIK ADKTKASAAQ ATSVLRDFDL NLAAAAAAAA TTAVDAESAL PEAKRVRMML 240 LVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG570000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802618.1 | 2e-85 | zinc finger protein 36-like | ||||
TrEMBL | A0A3L6T8Z9 | 2e-93 | A0A3L6T8Z9_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J16973.1.p | 8e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 3e-25 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG570000.1.p |