PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG392300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 881aa MW: 94205.3 Da PI: 10.7438 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 133 | 188 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k Pavir.2NG392300.1.p 133 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 188 688999***********************************************999 PP | |||||||
2 | START | 170.8 | 8.9e-54 | 351 | 581 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ++a++el+k a+ +ep+W s+ e +n de+++ f++ + + ea r+ gv + +++lv +l+d + +W+e+++ Pavir.2NG392300.1.p 351 LAAMEELMKVAQMDEPLWLPSAdggggglETLNFDEYRRAFARVLGpspagYVAEATREAGVAITSSVDLVDSLMDAA-RWSEMFPciva 439 789**************************************886669*******************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgil 153 +a+t++ issg g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd +p ++++ ++llp+g+l Pavir.2NG392300.1.p 440 RASTTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVGNPHHhalngggAAGYMGCRLLPTGCL 529 *************************************************************9999987777778889************* PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ng+skvtwv h++++++ +h+l+r+l++sg+a ga++w+a lqrqc+ Pavir.2NG392300.1.p 530 VQDMNNGYSKVTWVVHAEYDEAAVHQLYRPLLRSGQALGARRWLASLQRQCQ 581 ***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-22 | 115 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 120 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.107 | 130 | 190 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 131 | 194 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-19 | 133 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.75E-20 | 133 | 190 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 165 | 188 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.168 | 339 | 585 | IPR002913 | START domain |
CDD | cd08875 | 2.09E-103 | 343 | 581 | No hit | No description |
SuperFamily | SSF55961 | 4.67E-27 | 343 | 581 | No hit | No description |
SMART | SM00234 | 9.6E-42 | 348 | 582 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-45 | 351 | 581 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MSFGGMFDGA AGSGVFSYDA GGGGGGGGGG GGGSGAGMHN HGRLIPAPPL PKPGGFGAPG 60 LSLGLQTNMD GGQLGDMSRM GFMGGSGSGS AGEGDSLGRG REDENDSRSG SDNVDGASGD 120 ELDPDNSNPR KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSKRLN LESRQVKFWF 180 QNRRTQMKTH IERHENALLR QENDKLRAEN MTIREAMRNP ICANCGGAAV LGEVSLEEQH 240 LRIENARLKD ELDRVCALAG KFLGRPISSG STMASLPGCS GLELAVGSNG FGLGPLGASA 300 LQPLPDLMGG GLPGPVGSAA MRLPAGIGAL DGAMHGPGDG VDRAVLLELG LAAMEELMKV 360 AQMDEPLWLP SADGGGGGLE TLNFDEYRRA FARVLGPSPA GYVAEATREA GVAITSSVDL 420 VDSLMDAARW SEMFPCIVAR ASTTDIISSG MGGTRSGSIQ LMHAELQVLS PLVPIREVVF 480 LRFCKQHAEG LWAVVDVSVD AVGNPHHHAL NGGGAAGYMG CRLLPTGCLV QDMNNGYSKV 540 TWVVHAEYDE AAVHQLYRPL LRSGQALGAR RWLASLQRQC QYLAILCSNS LPARDHAAVN 600 GHGWRSDNAG GAEEHAEAGA ADDGQLLRGR VRVGGAEVAA PRRVARRRRW RGSRERRRRR 660 HRGRGRGEGA HDGAAERGRA RGGPRRGVER HNLRAPAVHA PAARVRLPPR RAAPRGVGHP 720 RQRRGHAGDG PHRQGPAPRQ RRLPPPPKCN EWQPEQHADL ARDLHRPLRL AGGVRAGGRA 780 VHARGHERRR LRVRLPPPLR LRHPPGRPQP AVERRPGLAG RPIVHRRVPG HRGVPDPGEQ 840 PAHREAHRGV GGHRQQPAHL HHPEDQVRPP GQHRHSLAGI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | RKKKKR |
2 | 645 | 659 | RRRRWRGSRERRRRR |
3 | 655 | 665 | RRRRRHRGRGR |
4 | 732 | 741 | RQGPAPRQRR |
5 | 787 | 794 | RRRLRVRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18068 | 0.0 | leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG392300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ250985 | 0.0 | AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801167.1 | 0.0 | homeobox-leucine zipper protein ROC6-like | ||||
Swissprot | Q7Y0V7 | 0.0 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | A0A1D6I978 | 0.0 | A0A1D6I978_MAIZE; Homeodomain leucine zipper family IV protein | ||||
STRING | Pavir.Ba01266.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG392300.1.p |