PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG375200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 502aa MW: 55653.5 Da PI: 7.3453 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.1 | 2.8e-11 | 192 | 235 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e Pavir.2NG375200.1.p 192 ERDTKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 235 78999**************************9633355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.3E-8 | 188 | 240 | No hit | No description |
SMART | SM00338 | 3.6E-7 | 192 | 257 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-8 | 192 | 235 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.071 | 194 | 236 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.73E-7 | 196 | 238 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 199 | 214 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.3E-28 | 292 | 366 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MASGGSLREH QQQQEMNISF GMVNNHHGGH HHHHQPPSSS SSSSMHAAAA SFMSGKEASG 60 AYDHLGELDQ ALFMYLDHGS GHGATHQEQR QTLNIFPSQP MHVEPSPKGE ISLVLSPAPV 120 GSKQPRSPDH HHHQQAAMEE LAGSRRLQQE HHHLQHQPFP AAGAEPAAGG MTKDVKPLAN 180 KKDHRRGTST SERDTKTLRR LAQNREAARK SRLRKKAYIQ QLESSRIRLA QLEQELHTAR 240 AQGVFFPNSS LLADQGVAGK GVPIGGIDGL SSEAAMFDVE YGRWQEEHYR LMYELRAALQ 300 QHLPEGELQM YVESCLAHHD EMMGIKEGAI KGDVFHLISG VWRSPAERCF LWLGGFRPSE 360 VIKMLLSHVE PLTEQQIVGV YGLQQSALET EEALSQGLDA LYQSLSDTVV SDALSCPSNV 420 ANYMGQMAAA INKLSTLEGF VRQAESLRQQ TLHRLHQILT TRQMARSLLA VSDYFHRLRT 480 LSSLWVTRPR APQEQPQQGH S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.26976 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG375200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651077.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q52MZ2 | 1e-170 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A1D6I6Z4 | 0.0 | A0A1D6I6Z4_MAIZE; BZIP transcription factor family protein | ||||
STRING | GRMZM2G006578_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7876 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-144 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG375200.1.p |