PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG296300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 453aa    MW: 50743.2 Da    PI: 5.9138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG296300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-16153243199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k +++s+v +  +l lpk+f e+h  + ++     +lede+g+    ++    ++++  l++GW++F+ ++++k+gD+vvF+l++ ++
  Pavir.2NG296300.1.p 153 FVKRMLQSHVVRGFWLGLPKSFSEKHlPKREA---GNVLEDEHGEDHHTTY--LDYKKG--LSAGWRGFAIDHDIKVGDVVVFELVKPTK 235
                          89************************533333...4799***********9..666666..9**********************998777 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v ++r+
  Pavir.2NG296300.1.p 236 F--KVYIVRA 243
                          7..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-22148244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-20149244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-27151242No hitNo description
PROSITE profilePS5086312.182153244IPR003340B3 DNA binding domain
SMARTSM010193.7E-20153244IPR003340B3 DNA binding domain
PfamPF023621.7E-14153243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGIDQPIKRK RGRPAGSRPA NTQMKQMALV KTRTVLLDSD NDDDYKPTDD ELSVVVTHQP  60
VAIPSGDTDD DGDDEVIPIK IVRPRRVPRN QRKLPGVPQT DGAKRISKGI HISTGESDVD  120
GRQIHASVDD NWESALSRAQ EIRANLPVEH PSFVKRMLQS HVVRGFWLGL PKSFSEKHLP  180
KREAGNVLED EHGEDHHTTY LDYKKGLSAG WRGFAIDHDI KVGDVVVFEL VKPTKFKVYI  240
VRANEFTMTD VDLNLLNSDA SKKEKQSNEE SSEDVITDED AKVGTPDREV PPSDGSTAYG  300
IGLDSDIDFD DVTSFSSVNV ILDCLATDCG FHDHLRRTYY ELCCSQRSLL HKNLLRQLHP  360
SLVAGVIVET VSIAEGIRAC KAQSSSREDF LNWKKTLESF ELLGMNVAFL LKRVNDLLAT  420
RSRESSEWQE KYKELKLERA CAGEKMKVLE LQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG296300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801418.10.0B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP991e-136Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2T7EPM30.0A0A2T7EPM3_9POAL; Uncharacterized protein
STRINGPavir.Ba03110.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]