PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG201900.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 312aa MW: 33092.8 Da PI: 8.9908 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 75.6 | 6.7e-24 | 203 | 265 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el++lkk ++ +++e+ Pavir.2NG201900.4.p 203 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 265 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-17 | 198 | 263 | No hit | No description |
Pfam | PF00170 | 1.0E-21 | 203 | 265 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 5.3E-21 | 203 | 267 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 205 | 268 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-10 | 206 | 261 | No hit | No description |
CDD | cd14702 | 3.37E-19 | 208 | 258 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 210 | 225 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MQAYYAAGGQ PYAWHAAQQH MLAAAAAAAG APYGTPMPFH VSFHPAYYAH AAMATSVPYT 60 AGEALAVAEG KSKRKSSGAP SVGSASGSNG GSEEASEKRD ASAGHKLLPS AKRRKSTGAN 120 GQGEPSQAAI MQDVAAEARS AAKRPGKLSV STTEMAAISN ARPNLNIGID LWSNSPVKAE 180 TSGPIQINAA APSHDVPLSH MDERELKRER RKQSNRESAR RSRLRKQQEC EELAQKVTDL 240 TAINGTLRSE LDQLKKACED MEAENSQLMG EMEQAEAPSV VTTLSMHIDT AKVHHGKSDQ 300 HRDKNNNDSK G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 225 | RRSRLRK |
2 | 219 | 226 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 1e-163 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG201900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317833.1 | 1e-164 | DNA-binding protein EMBP-1 isoform X2 | ||||
Swissprot | P25032 | 1e-58 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A3L6TLH8 | 1e-170 | A0A3L6TLH8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J09275.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 1e-26 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG201900.4.p |