PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG274400.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 403aa    MW: 44304.7 Da    PI: 9.1171
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG274400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-11117146534
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                          k  rr+++NReAAr+sR+RKka+i++Le+ 
  Pavir.2KG274400.6.p 117 KTLRRLAQNREAARKSRLRKKAYIQQLETS 146
                          788************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.9E-6113168IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.829115158IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-8115157No hitNo description
PfamPF001701.7E-8117146IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.09E-7117151No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
PfamPF141444.2E-28202274IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAEFDQSAIF LYLDGHDQEQ RQTLNIFPSQ PMHVAEPIPA KGVSMGMVAA MLPNGNSSPP  60
KRQEQGGQRS PAVPPPAPTV ALPNSAKETK SSLSKKEAKS GGKGATSGDQ ERVRDPKTLR  120
RLAQNREAAR KSRLRKKAYI QQLETSRIRL SQLEQQVQVA RVQGVFLGTG EQPGFPSAPS  180
PAAVVFDMEY GRWVEEHSKL IFQLRAALNE HLADEQLQGF VNGAMAQHEE LLNLKGAMAR  240
ADVFHLLSGV WASPAERCFL WLGGFRPSEV IKVMLKHVEP LSEGQILGIY NLQQSVQERE  300
EALNHSMEAT QQSISDTIAA PDVAPATFMG HMSIAMNKVA SMEGFVMQAD GLRQQTLHKL  360
HHILTTRQAA RCMVAIADYF HRLRALSTLC VARPRQEDGP AL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.265921e-149root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG274400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804474.10.0transcription factor TGAL7-like isoform X3
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A3L6TBM40.0A0A3L6TBM4_PANMI; Transcription factor TGA2-like isoform X1
STRINGPavir.Bb01669.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-127bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]