PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG189400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 160aa    MW: 17774.9 Da    PI: 9.3191
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG189400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22.1e-142975349
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                         e++r rrk++NRe+ArrsR+RK++ ++ L+  vk L+ +Nk+L   l
  Pavir.2KG189400.1.p 29 ERRRKRRKESNRESARRSRLRKQQHLDDLTSQVKHLKDQNKQLSLAL 75
                         789***************************************98544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-132791IPR004827Basic-leucine zipper domain
PfamPF001709.5E-122974IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9212992IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-113181No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-1131104No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
CDDcd147023.86E-143880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSGTLSGSS LGTRSSKSED DLDLQAQMER RRKRRKESNR ESARRSRLRK QQHLDDLTSQ  60
VKHLKDQNKQ LSLALSITSQ NLVAVQAQNS VLQTQKMELD SRLSALTEIL CYMNTITCTN  120
ASAPANPAMA NNITSSSSYD LLGASCTWNQ QPIDMYQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935RRRKRRK
22936RRRKRRKE
33136RKRRKE
44349RRSRLRK
54350RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102101e-145callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG189400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802226.14e-90bZIP transcription factor 44-like
TrEMBLA0A2S3GYW78e-89A0A2S3GYW7_9POAL; Uncharacterized protein
TrEMBLA0A2T7EQY88e-89A0A2T7EQY8_9POAL; Uncharacterized protein
STRINGPavir.Bb01636.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-15basic leucine-zipper 44