PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG166500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 325aa    MW: 33801.2 Da    PI: 9.457
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG166500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.33.8e-24201263163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Pavir.2KG166500.2.p 201 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMETEN 263
                          89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-17196260No hitNo description
PfamPF001701.2E-21201263IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-22201265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.173203266IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-11204259No hitNo description
CDDcd147022.70E-21206257No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAAAAGAPF GTPVPFPVYH PAYYAHASMA AGVPYPTAEA AAAAAAAAAT AAEGKGKGKG  60
GGASPEKGSS GASSGEDASR SGDERQRGVA GTRDNDTDHK DSSAPKKRKS GNTLAEGEPS  120
QAAVVRYAAV ESPYPAVKGR SASKLPVSAP GRAALPNATP NLNIGMDFWS ASPALAVPAV  180
QGEASPGLAL ARRDSVTQLD ERELKRERRK QSNRESARRS RLRKQQECEE LARKVADLTT  240
ENSALRAELD NLKKACQDME TENSRLLGGM AYSQGPSVTT TLGMSIDPPK VQHHDDEGQL  300
HKNTSNNSNG NYTGASHKQE ANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223RRSRLRK
2217224RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.283560.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG166500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955801.11e-172DNA-binding protein EMBP-1
SwissprotP250326e-63EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3L6T6W41e-177A0A3L6T6W4_PANMI; DNA-binding protein EMBP-1-like
STRINGPavir.Bb00931.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-24basic region/leucine zipper transcription factor 16