PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG080500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 610aa MW: 63302.6 Da PI: 7.955

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG080500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.7	9.6e-24	231	274	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pavir.2KG080500.1.p 231 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 274 69***************************************986 PP
2	QLQ	59	1.4e-20	163	199	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+Pp Ll++i++ Pavir.2KG080500.1.p 163 GPFTPSQWIELEHQALIYKYLAANSPIPPSLLVPIRR 199 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-12	163	199	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.503	164	199	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.4E-15	164	198	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	230	274	IPR014977	WRC domain
Pfam	PF08879	5.2E-20	232	273	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MSATSTRAKG AARRASGGGG GAMELGGVVM DAGGGAAELG LLGGGSSRLL KHGRGNAAAG 60 GEEHGWGARA AKQARAAADA AEAAKAAVAP FLLGSCSPSH GGEQMLSFSS AAASSCASTA 120 AVAAAAAADG AMPLYYGTPA SCSGLSSVSL CSSMQGAMAR VRGPFTPSQW IELEHQALIY 180 KYLAANSPIP PSLLVPIRRS IASSPYPPSY FGTSTLGWGS FQLGYSGNAD LEPGRCRRTD 240 GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGQPGHAA KAMSAAVAAA AATQPPALAA 300 SGAGASAAGL TVSQHQQPVK SYSAGATDPC SLQYNRELVN KQNESDNMQD SDNLSMLTSM 360 STRNPGSLFP FSKQNNPFEV TSSRLEFGLV SSDSLMSSPH SSLEHVNLLS SQSLNENQSS 420 ASLQHFVDWP RTPAQGGLSW ADAEDMQAQR SQLSISAPMA SSELSSASTS PIHEKLMLSP 480 LKLSREYSPI GLSIAASRDE VSQLEANWAT MFRDSSMGGP LGEVLTKNGN GEARNCLRAP 540 LNLLTDCWDS SPGMESSPVG VLQKTTFGSV SSSTGSSPRM ENHGAYDGIS NLRDDLGSIV 600 VNHPSIRLM*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MSATSTRAKG AARRASGGGG GAMELGGVVM DAGGGAAELG LLGGGSSRLL KHGRGNAAAG  60
GEEHGWGARA AKQARAAADA AEAAKAAVAP FLLGSCSPSH GGEQMLSFSS AAASSCASTA  120
AVAAAAAADG AMPLYYGTPA SCSGLSSVSL CSSMQGAMAR VRGPFTPSQW IELEHQALIY  180
KYLAANSPIP PSLLVPIRRS IASSPYPPSY FGTSTLGWGS FQLGYSGNAD LEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGQPGHAA KAMSAAVAAA AATQPPALAA  300
SGAGASAAGL TVSQHQQPVK SYSAGATDPC SLQYNRELVN KQNESDNMQD SDNLSMLTSM  360
STRNPGSLFP FSKQNNPFEV TSSRLEFGLV SSDSLMSSPH SSLEHVNLLS SQSLNENQSS  420
ASLQHFVDWP RTPAQGGLSW ADAEDMQAQR SQLSISAPMA SSELSSASTS PIHEKLMLSP  480
LKLSREYSPI GLSIAASRDE VSQLEANWAT MFRDSSMGGP LGEVLTKNGN GEARNCLRAP  540
LNLLTDCWDS SPGMESSPVG VLQKTTFGSV SSSTGSSPRM ENHGAYDGIS NLRDDLGSIV  600
VNHPSIRLM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5986	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG080500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795429.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2T7C1L7	0.0	A0A2T7C1L7_9POAL; Uncharacterized protein
STRING	Pavir.J11763.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-48	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pavir.2KG080500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]