PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG000100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 359aa    MW: 37213.4 Da    PI: 6.7464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG000100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32148205259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Pavir.2KG000100.1.p 148 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSSDPSVVITTYEGQHCHH 205
                          8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32132206IPR003657WRKY domain
SuperFamilySSF1182906.67E-28139205IPR003657WRKY domain
PROSITE profilePS5081129.998142207IPR003657WRKY domain
SMARTSM007742.0E-38147206IPR003657WRKY domain
PfamPF031061.1E-25148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAGTGEAGVA GGGEWPFSAD AYADSSAIFA ELGCWAAGLD GGELLLPALD PPEDKYTLLP  60
PPLSEPAGSV SVDGGASSSS TDDGAAQEDA ADGKPAAATE AASKPAPGKT RATTAGGNNN  120
SKSGQKNKKR ARQARFAFMT KSDVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTNSKCTV  180
KKRVERSSSD PSVVITTYEG QHCHHTVTFP RAAHLHAAAA LAGHMAFSAA HHHLYTASND  240
DHLPPLLLQQ QHPTTAAAQQ QQSALLITTS SGGDSLTCMP AMSPSSSLLL RPLHCDQELL  300
AATYPLSSSA MTTMPAVASS LVVSTTQSPS PTTAVSSSPA ALDSGLLDDM VPPAMRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25137204774Probable WRKY transcription factor 4
2lex_A1e-25137204774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG000100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409588e-75AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418588e-75AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803236.11e-151probable WRKY transcription factor 48
TrEMBLA0A2T7EK821e-155A0A2T7EK82_9POAL; Uncharacterized protein
STRINGPavir.Bb00073.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-50WRKY DNA-binding protein 57